PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 218aa    MW: 25001.4 Da    PI: 9.4121
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4023.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM898.5e-28181881128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.a...................... 77 
                lppGfrFhPtdeel+v+yLk+++ ++++++ ++i+evdiyk++Pw+Lp k++ +e+ewyfF++++  +  g  + r                        
  Dca4023.1  18 LPPGFRFHPTDEELIVHYLKNQAMSRPCPV-SIIPEVDIYKFDPWQLPDKAEFGENEWYFFTPSRVLNI-GIGRDRgCgrgvtvsalnrlsrtmtrssrk 115
                79****************************.89***************99999**********988766.333333135666777777777778888888 PP

        NAM  78 ........tksgyWkatgkdkevlsk.....kgel..........vglkktLvfykg.rapkgektdWvmheyrl 128
                        +++++ ++t + ++v s+     +  +          +   +++ + +g   pkg+ktdW+mheyrl
  Dca4023.1 116 vreispylVSAATESETSRPRRVNSAeilnpD--TkrpevpewdpTQSSHVIGLLEGnGPPKGSKTDWIMHEYRL 188
                88888887445555677777777665555442..044677777779999999999985689************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-28982IPR003441NAC domain
PROSITE profilePS5100533.1918215IPR003441NAC domain
PfamPF023652.0E-1419188IPR003441NAC domain
SuperFamilySSF1019417.59E-11171215IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MHTSSIIMEG HSSRSSNLPP GFRFHPTDEE LIVHYLKNQA MSRPCPVSII PEVDIYKFDP  60
WQLPDKAEFG ENEWYFFTPS RVLNIGIGRD RGCGRGVTVS ALNRLSRTMT RSSRKVREIS  120
PYLVSAATES ETSRPRRVNS AEILNPDTKR PEVPEWDPTQ SSHVIGLLEG NGPPKGSKTD  180
WIMHEYRLTE AKHQPLKQHG SMRLDDWVLC RIYKKRSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-391721716167NO APICAL MERISTEM PROTEIN
1ut4_B6e-391721716167NO APICAL MERISTEM PROTEIN
1ut7_A6e-391721716167NO APICAL MERISTEM PROTEIN
1ut7_B6e-391721716167NO APICAL MERISTEM PROTEIN
3swm_A7e-391721719170NAC domain-containing protein 19
3swm_B7e-391721719170NAC domain-containing protein 19
3swm_C7e-391721719170NAC domain-containing protein 19
3swm_D7e-391721719170NAC domain-containing protein 19
3swp_A7e-391721719170NAC domain-containing protein 19
3swp_B7e-391721719170NAC domain-containing protein 19
3swp_C7e-391721719170NAC domain-containing protein 19
3swp_D7e-391721719170NAC domain-containing protein 19
4dul_A6e-391721716167NAC domain-containing protein 19
4dul_B6e-391721716167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683140.11e-66PREDICTED: NAC transcription factor 29-like
SwissprotO492552e-56NAC29_ARATH; NAC transcription factor 29
TrEMBLA0A0K9RTR33e-67A0A0K9RTR3_SPIOL; Uncharacterized protein
STRINGPOPTR_0008s08850.17e-58(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-55NAC-like, activated by AP3/PI